SUPERMAGO+Web
SUPERMAGO+Web is an online platform designed to predict protein functions. It utilizes Large Language Models (LLMs) pre-trained on protein sequences, along with multilayer perceptron and DIAMOND, a local alignment tool.
Input:
- Minimum Confidence: This parameter specifies the minimum confidence level required for a term to be considered during output generation.
- FASTA Sequences: The sequences to be predicted should be provided in FASTA format. Each query can include up to 50 sequences and is limited to 100,000 characters per task.
- Add Security Password: Checkbox that determines whether the task will have a password. If not selected, all system users will be able to view the predicted proteins and terms. If you select the option to add a security password, a unique password for the submitted task will be generated. This password will be required to access the results. You must save the password to access the results.
Queue:
- Upon submission, you will receive a task ID, allowing you to check the status of your task. Tasks may either be in the queue for processing (Pending Tasks) or ready for output visualization (Processed Tasks).
- Each processed task will be accessible for 24 hours after completion, with the completion time indicating when the processing finished.
- If you choose to add a security password, you will be required to enter the provided password when attempting to access the results.
Output:
For each sequence, the output page will display the confidence levels, ranging from 0 to 1, for each term predicted in the categories of Biological Process, Cellular Component, and Molecular Function. Terms with confidence levels below the specified minimum value will be excluded from the output.
For more details, please refer to the Documentation page.
Estimated Execution Time: 5 minutes